PORTNAME=	ont-fast5-api
DISTVERSIONPREFIX=	release_
DISTVERSION=	4.1.3
CATEGORIES=	biology python
PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

MAINTAINER=	ports@FreeBSD.org
COMMENT=	Interface to HDF5 files in Oxford Nanopore .fast5 format
WWW=		https://github.com/nanoporetech/ont_fast5_api

LICENSE=	MPL20
LICENSE_FILE=	${WRKSRC}/LICENSE.md

LIB_DEPENDS=	libvbz_hdf_plugin.so:archivers/vbz-compression
RUN_DEPENDS=	${PYNUMPY} \
		${PYTHON_PKGNAMEPREFIX}h5py>=3:science/py-h5py@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR} \
		${PYTHON_PKGNAMEPREFIX}progressbar>=2.3.1:misc/py-progressbar@${PY_FLAVOR}
TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pip>=0:devel/py-pip@${PY_FLAVOR}

USES=		python
# Does not yet build with pep517
USE_PYTHON=	autoplist concurrent distutils
USE_GITHUB=	yes

GH_ACCOUNT=	nanoporetech
GH_PROJECT=	ont_fast5_api

NO_ARCH=	yes
NO_BUILD=	yes

post-patch:
	${RM} ${WRKSRC}/ont_fast5_api/vbz_plugin/*

pre-configure:
	@${REINPLACE_CMD} -e 's|progressbar33|progressbar|g' \
		${WRKSRC}/setup.py \
		${WRKSRC}/README.rst \
		${WRKSRC}/ont_fast5_api/conversion_tools/conversion_utils.py

do-test:
	@cd ${WRKSRC} && ${PYTHON_CMD} ${PYDISTUTILS_SETUP} test

.include <bsd.port.mk>